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kraken2‐to‐mag‐features
Santiago Castro Dau edited this page Apr 23, 2024
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Convert a Kraken 2 report, which is an annotated NCBI taxonomy tree into generic artifacts for downstream analyses.
For the full description of the action's inputs, outputs and parameters run
qiime moshpit kraken2‐to‐mag‐features --helpin the terminal.
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reports(FeatureData[Kraken2Report % Properties('mags')]): Per-sample Kraken 2 reports. -
hits(FeatureData[Kraken2Output % Properties('mags')]): Per-sample Kraken 2 output files.
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taxonomy(FeatureData[Taxonomy]): Infra-clade ranks are ignored unless they are strain-level. Missing internal ranks are annotated by their next most specific rank, with the exception of k__Bacteria and k__Archaea which match their domain's name.