EggnogHmmerIdmap

List of protein families in a profile HMM database.

Artifact Format

class EggnogHmmerIdmapDirectoryFmt(model.DirectoryFormat):
    idmap = model.File(r'.*\.hmm\.idmap', format=EggnogHmmerIdmapFileFmt)

Expected Folder Structure

data
└── <taxon_id>.hmm.idmap

Where to find EggnogHmmerIdmap

• The Functional Annotation of MAGs (or Contigs) tutorial.

Actions that use ProfileHMM[PressedProtein] artifacts:

As Output

• fetch‐eggnog‐hmmer‐db

As Input

• eggnog-hmmer-search