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20 Open 72 Closed
20 Open 72 Closed
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Issues list

ENH: allow download of the core_nt Kraken 2 database by the build-kraken-db action enhancement New feature or request
#223 opened Dec 16, 2024 by misialq
ENH: Add functionality to filter sequence data by Kraken hits enhancement New feature or request
#222 opened Dec 11, 2024 by johnchase
2
BUG: Add a clearer error message for full tmpdir bug Something isn't working
#217 opened Nov 13, 2024 by lina-kim
BUG: unrecognised file when downloading Busco db bug Something isn't working
#215 opened Oct 24, 2024 by VinzentRisch
@VinzentRisch
BUG: classify-kraken2 fails when trying to process empty fastq files. bug Something isn't working
#211 opened Oct 18, 2024 by mikerobeson
ENH: add action to filter Kraken reports enhancement New feature or request
#209 opened Oct 8, 2024 by misialq
1
@VinzentRisch
BUG: ParseError when running eggnog-hmmer-search bug Something isn't working
#207 opened Sep 24, 2024 by DorielaGrabocka
@DorielaGrabocka
ENH: Wrap fastp in moshpit enhancement New feature or request
#203 opened Sep 12, 2024 by rhernandvel
@misialq
1
ENH: add action to build a Kaiju database enhancement New feature or request
#198 opened Aug 30, 2024 by misialq Manuscript prep
1
ENH: import MAGs while tracking original names from the fasta files enhancement New feature or request
#186 opened Jun 28, 2024 by rhernandvel
ENH: add action to transfer EggNOG annotations from annotated MAGs to the dereplicated MAGs enhancement New feature or request
#180 opened Jun 20, 2024 by misialq
ENH: allow using BUSCOResult during MAG dereplication enhancement New feature or request
#161 opened May 10, 2024 by misialq
@VinzentRisch
ENH: output GFF files from the eggnog-diamond-search action dependent enhancement New feature or request
#153 opened Apr 11, 2024 by misialq
@DorielaGrabocka
ENH: allow binning across all samples dependent enhancement New feature or request
#152 opened Apr 11, 2024 by misialq
@misialq
4
MAINT: use new_taxdump in fetch-ncbi-taxonomy? enhancement New feature or request
#124 opened Jan 23, 2024 by Sann5
ENH: add fetch-busco-db action and update evaluate-busco accordingly enhancement New feature or request
#122 opened Jan 19, 2024 by Sann5
1
@Sann5
ENH: add support for other MAG dereplication tools enhancement New feature or request
#99 opened Nov 23, 2023 by misialq
ENH: add pavian as a visualization option for Kraken 2 results enhancement New feature or request
#90 opened Oct 19, 2023 by misialq
add pre-commit hooks and reformat with Black maintenance
#40 opened May 12, 2023 by misialq
@misialq
bin-contigs-metabat fails if no MAGs are formed for a sample bug Something isn't working
#27 opened Apr 4, 2023 by gregcaporaso
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