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@bokulich-lab

Laboratory of Food Systems Biotechnology

FSB Lab, Institute of Food, Nutrition, and Health, D-HEST, ETH Zurich

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  1. RESCRIPt RESCRIPt Public

    REference Sequence annotation and CuRatIon Pipeline

    Python 94 26

  2. q2-fondue q2-fondue Public

    Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere

    Python 20 7

  3. q2-assembly q2-assembly Public

    QIIME 2 plugin for (meta)genome assembly.

    Python 4 13

  4. q2-moshpit q2-moshpit Public

    QIIME 2 plugin for functional annotation and taxonomic classification of shotgun metagenomes.

    Python 3 14

Repositories

Showing 10 of 33 repositories
  • q2-viromics Public
    bokulich-lab/q2-viromics’s past year of commit activity
    Python 0 BSD-3-Clause 4 1 0 Updated Dec 23, 2024
  • q2-amrfinderplus Public

    q2-amrfinderplus: QIIME 2 plugin to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences with AMRFinderPlus.

    bokulich-lab/q2-amrfinderplus’s past year of commit activity
    Python 0 BSD-3-Clause 2 0 0 Updated Dec 23, 2024
  • mishmash Public
    bokulich-lab/mishmash’s past year of commit activity
    Python 1 BSD-3-Clause 1 7 0 Updated Dec 21, 2024
  • utilities Public

    A collection of utilities used across repos.

    bokulich-lab/utilities’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 20, 2024
  • q2-moshpit Public

    QIIME 2 plugin for functional annotation and taxonomic classification of shotgun metagenomes.

    bokulich-lab/q2-moshpit’s past year of commit activity
    Python 3 BSD-3-Clause 14 20 4 Updated Dec 20, 2024
  • q2-assembly Public

    QIIME 2 plugin for (meta)genome assembly.

    bokulich-lab/q2-assembly’s past year of commit activity
    Python 4 BSD-3-Clause 13 10 2 Updated Dec 20, 2024
  • q2-fondue Public

    Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere

    bokulich-lab/q2-fondue’s past year of commit activity
    Python 20 BSD-3-Clause 7 11 1 Updated Dec 20, 2024
  • RESCRIPt Public

    REference Sequence annotation and CuRatIon Pipeline

    bokulich-lab/RESCRIPt’s past year of commit activity
    Python 94 BSD-3-Clause 26 15 0 Updated Dec 19, 2024
  • moshpit-docs Public

    MOSHPIT plugin suite documentation

    bokulich-lab/moshpit-docs’s past year of commit activity
    TeX 0 BSD-3-Clause 2 0 1 Updated Dec 16, 2024
  • MOSHPIT Public

    Provides "mosh" cli command and "moshpit" proxy package.

    bokulich-lab/MOSHPIT’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 1 Updated Dec 11, 2024
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