build‐custom‐diamond‐db

Creates a Diamond database from a custom protein database.

• For the full description of the action's inputs, outputs and parameters run qiime moshpit build‐custom‐diamond‐db --help in the terminal.

Inputs

• seqs (FeatureData[ProteinSequence]): Protein reference database.
• taxonomy (ReferenceDB[NCBITaxonomy]): Reference taxonomy. This input is optional but it's needed if you want the resulting database to have taxonomy features.

Outputs

• diamond-db (ReferenceDB[Diamond]): Diamond database.

Example Use

qiime moshpit build-custom-diamond-db \
   --i-seqs my_proteins.qza \
   --o-diamond-db diamond.qza \
   --verbose

Tutorials

List of tutorials that involve this action.

• Functional Annotation of MAGs (or Contigs)

Links to Relevant Resources

• NCBI FTP server

Citation

@misc{key0,
 note = {Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information;},
 title = {National Center for Biotechnology Information (NCBI)},
 url = {https://www.ncbi.nlm.nih.gov/}
}