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ENH: allow using BUSCOResult during MAG dereplication #161

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misialq opened this issue May 10, 2024 · 0 comments
Open

ENH: allow using BUSCOResult during MAG dereplication #161

misialq opened this issue May 10, 2024 · 0 comments
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enhancement New feature or request

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@misialq
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misialq commented May 10, 2024

Is your feature request related to a problem? Please describe.
Currently, the dereplication action picks the longest MAG as the representative of the MAG cluster. We could use BUSCO results to enable picking that representative using some quality metrics and/or length.

Describe the solution you'd like
The dereplicate-mags action should accept BUSCOResults as an optional parameter. Additionally, the user should be able to indicate how they want the representative to be selected:

  • if no results were provided - pick the longest one
  • if BUSCOResults were provided - pick the most complete one; in case of a tie, pick the longest one
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