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ENH: add fetch-busco-db action and update evaluate-busco accordingly #122

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Sann5 opened this issue Jan 19, 2024 · 0 comments
Open
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ENH: add fetch-busco-db action and update evaluate-busco accordingly #122

Sann5 opened this issue Jan 19, 2024 · 0 comments
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enhancement New feature or request

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Sann5 commented Jan 19, 2024

At the moment, the action evaluate-busco downloads data from the internet and uses it to identify BUSCO genes in the analyzed sequences. There is a need to change this, such that the download happens before the BUSCO analysis.

Objectives of this enhancement:

  1. Create a new action (fetch-busco-db) that fetches this data and stores it in an artifact.
  2. Modify evaluate-busco such that it takes the output of fetch-busco-db as input.

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  1. enhancement
    Sann5
  2. bug-sev:3|medium bug-type:2|workaround-req

Useful for the fetch-busco-db implementation:

@Sann5 Sann5 added the enhancement New feature or request label Jan 19, 2024
@Sann5 Sann5 self-assigned this Jan 19, 2024
@Sann5 Sann5 changed the title ENH: action to download BUSCO dataset (and ad hoc modifications to evaluate-busco) ENH: add fetch-busco-db action and update evaluate-busco accordingly Jan 24, 2024
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