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ENH: Wrap fastp in moshpit #203

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rhernandvel opened this issue Sep 12, 2024 · 1 comment
Open

ENH: Wrap fastp in moshpit #203

rhernandvel opened this issue Sep 12, 2024 · 1 comment
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enhancement New feature or request

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@rhernandvel
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Hi, it would be great to have fastp wrapped in moshpit since it “is 2–5 times faster than other FASTQ preprocessing tools such as Trimmomatic or Cutadapt”. It also has additional functionality for raw read processing and it is more suitable for metanalysis.
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@rhernandvel rhernandvel added the enhancement New feature or request label Sep 12, 2024
@nbokulich
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should this go in moshpit? It sounds like this is perhaps a more general purpose tool (akin to cutadapt) and could go in its own plugin. That would make more sense if this is a plugin that might eventually go in multiple distributions. That might also be nice to isolate any possible dependency issues. Perhaps the authors would even be interested in creating a plugin to wrap fastp?

@misialq misialq self-assigned this Dec 12, 2024
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