hardware-accelerator

Here are 10 public repositories matching this topic...

cucapra / filament

Fearless hardware design

fpga type-system hardware-description-language hardware-accelerator

Updated May 25, 2024
Verilog

SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.o…

fpga gpu smith-waterman needleman-wunsch sequence-alignment long-reads minimap2 short-reads hardware-accelerator sequence-aligner edlib pre-alignment-filtering wavefront-alignment

Updated Mar 31, 2023
VHDL

Intuity / nexus

Star

Open source RTL simulation acceleration on commodity hardware

hardware simulation rtl verilog systemverilog hardware-acceleration hardware-accelerator hardware-accelerators

Updated Apr 13, 2023
Python

yonseicasl / NeuroSpector

Star

NeuroSpector: Dataflow and Mapping Optimization of Deep Neural Network Accelerators

machine-learning acceleration deep-learning mapping optimization accelerator scheduler architecture scheduling optimizer dataflow hierarchy deep-neural-network hardware-accelerator

Updated May 9, 2024
C++

CMU-SAFARI / GenStore

Star

GenStore is the first in-storage processing system designed for genome sequence analysis that greatly reduces both data movement and computational overheads of genome sequence analysis by exploiting low-cost and accurate in-storage filters. Described in the ASPLOS 2022 paper by Mansouri Ghiasi et al. at https://people.inf.ethz.ch/omutlu/pub/GenS…

ftl ssd sequence-alignment read-mapping long-reads hardware-accelerator near-data-processing pre-alignment-filtering in-storage-processing exact-matching