wilhelm-lab / PROSPECT Star 8 Code Issues Pull requests Proteomics Mass Spectrometry Datasets for Machine Learning spectrum machine-learning deep-learning annotations dataset proteomics mass-spectrometry ptm peptides retention-time peptide-sequences post-translational-modification fragment-ions Updated Jun 5, 2024 Python
ikcgroup / pepfrag Star 3 Code Issues Pull requests A library for fast peptide fragment ion generation peptides fragment-ions fragment-generation Updated Jul 13, 2021 C++
hgb-bin-proteomics / MSAnnika_CSM_Annotation Star 1 Code Issues Pull requests Discussions Calculates Intensities of Cross-linked Peptides from MS Annika CSMs. python annotation proteomics mass-spectrometry spectrometry mass cross-linking ms2 ms3 fragment-ions crosslinking xlms crosslinker tandem-ms doublet-ions Updated Sep 4, 2023 Python
hgb-bin-proteomics / MSAnnika_Spectral_Library_exporter Star 0 Code Issues Pull requests Discussions Generate a spectral library for Spectronaut from MS Annika results. python fragments library spectral proteomics mass-spectrometry spectrometry mass cross-linking ms2 spectral-library fragment-ions crosslinking spectronaut xlms crosslinker tandem-ms Updated Jan 9, 2024 Python