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1. MSAmanda MSAmanda Public

   MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins.

   3

2. MSAnnika MSAnnika Public

   MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of MS2-cleavable crosslinkers from MS2 and MS3 spectra.

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3. MSAnnika_Extensions MSAnnika_Extensions Public

   List of all available extensions for our cross-linking search engine MS Annika.

4. MSAnnika_Spectral_Library_exporter MSAnnika_Spectral_Library_exporter Public

   Generate a spectral library for Spectronaut from MS Annika results.

   Python

5. MSAnnika_FDR MSAnnika_FDR Public

   A script and functions to group and validate MS Annika results.

   Python

6. CandidateSearch CandidateSearch Public

   Proof-of-concept implementation of a search engine that uses sparse matrix multiplication to identify the best peptide candidates for a given mass spectrum.

   C# 1 1