nextstrain / nextclade Star 200 Code Issues Pull requests Discussions Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement science research virus sequencing next-generation-sequencing dna rna influenza sequences strain nextstrain ncov coronavirus covid-19 covid covid19 sars-cov-2 neherlab clades clade Updated May 17, 2024 TypeScript
tkmanabat / SARS-CoV-2-Clade-Identifier Star 0 Code Issues Pull requests SARS-CoV-2 Clade identifier with SNP data using machine learning. genomics phylogenetics sars-cov-2 clade bioninformatics single-nucleotide-polymorphisms Updated Jul 7, 2022 Jupyter Notebook
eliottBo / MLSTclassifier_cd Star 0 Code Issues Pull requests multi-locus sequence type clade classifier for Clostridioides difficile classifier machine-learning bioinformatics tool microbiology mlst multi-locus-sequence-typing clade Updated Mar 30, 2024 Python