Skip to content

Issues: nextstrain/nextclade

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

108 Open 351 Closed
108 Open 351 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Feature Request: More categories for '--output-columns-selection' t:feat Type: request of a new feature, functionality, enchancement
#1545 opened Nov 5, 2024 by ammaraziz
2
Allow toggling of sort state by clicking on column name/text itself package: nextclade_web t:feat Type: request of a new feature, functionality, enchancement
#1537 opened Oct 16, 2024 by corneliusroemer
3
Synonymous mutations
#1535 opened Oct 16, 2024 by claudia-as
1
qc algorithm for nonACTGNs needs triage Mark for review and label assignment t:ask Type: question, request of information 1
#1524 opened Sep 23, 2024 by ryhisner
2
Definition of Private Mutation/Deletion in Nextclade CLI ndjson needs triage Mark for review and label assignment t:ask Type: question, request of information 1
#1523 opened Sep 14, 2024 by ryhisner
2
nextclade run with optional dataset tag input good first issue Good for newcomers help wanted Extra attention is needed t:feat Type: request of a new feature, functionality, enchancement
#1521 opened Sep 11, 2024 by jrotieno
5
Nucleotide insertions not shown in peptide tooltip, causing confusion in case of frameshift due to nt insertion package: nextclade_web t:feat Type: request of a new feature, functionality, enchancement
#1520 opened Sep 4, 2024 by whottel
6
Can't do quality control when change reference t:ask Type: question, request of information 1
#1519 opened Sep 3, 2024 by YangJingqii
1
List of mutational changes per clade t:ask Type: question, request of information 1
#1515 opened Aug 2, 2024 by huzuner
2
Add coverage per CDS to output good first issue Good for newcomers help wanted Extra attention is needed t:feat Type: request of a new feature, functionality, enchancement
#1513 opened Jul 19, 2024 by joverlee521
1
8
SVG download for the Results table source: office hours Issue mentioned during office hours t:feat Type: request of a new feature, functionality, enchancement
#1510 opened Jul 11, 2024 by joverlee521
Bioconda workflow failed with push error due to insufficient permissions t:bug Type: bug, error, something isn't working
#1509 opened Jul 11, 2024 by corneliusroemer
7
Rename master to main t:feat Type: request of a new feature, functionality, enchancement
#1488 opened Jun 13, 2024 by genehack
Max marker setting even counts markers that are off package: nextclade_web t:bug Type: bug, error, something isn't working
#1476 opened Jun 5, 2024 by corneliusroemer
[minor] Auspice dataset functionality: URL redirects don't update displayed metadata t:bug Type: bug, error, something isn't working
#1475 opened Jun 5, 2024 by jameshadfield
3
Nextclade Web: don't store unnecessary dataset info in local storage t:bug Type: bug, error, something isn't working
#1464 opened May 30, 2024 by ivan-aksamentov
Nextclade Web: consider rethinking dataset badges t:feat Type: request of a new feature, functionality, enchancement
#1463 opened May 30, 2024 by ivan-aksamentov
1
Nextclade Web: Confusing unwanted dataset switching t:bug Type: bug, error, something isn't working
#1462 opened May 30, 2024 by ivan-aksamentov
3
docs: document nextalign-like use-case docs Documentation related issues good first issue Good for newcomers help wanted Extra attention is needed
#1456 opened May 17, 2024 by ivan-aksamentov
1
When using ?input-fasta= url query param without specifying dataset, web auto-starts analysis (prematurely) package: nextclade_web t:bug Type: bug, error, something isn't working
#1436 opened Apr 17, 2024 by corneliusroemer
5
--input-pcr-primers listed in CLI help options despite being removed in v3 good first issue Good for newcomers help wanted Extra attention is needed t:bug Type: bug, error, something isn't working
#1432 opened Apr 4, 2024 by kapsakcj
2
Add a BA.1 reference for the web nextclade version t:feat Type: request of a new feature, functionality, enchancement
#1426 opened Feb 23, 2024 by murallcl
4
Allow suppression of |(reverse complement) suffix in header of alignment output t:feat Type: request of a new feature, functionality, enchancement
#1378 opened Jan 10, 2024 by corneliusroemer
2
web-based nextclade issue when using another reference t:ask Type: question, request of information 1
#1364 opened Dec 20, 2023 by yl315504
8
Web crash: The target <seqName> could not be identified in the dom package: nextclade_web prio: low t:bug Type: bug, error, something isn't working v3 To consider for v3
#1347 opened Dec 17, 2023 by corneliusroemer
2
ProTip! Follow long discussions with comments:>50.