Issues: snakemake/snakemake
Announcement: Snakemake 8.0 released, including the removal o...
#2409
opened Aug 15, 2023 by
johanneskoester
Open
21
Join the Snakemake discord server for user and dev exchange
#628
opened Sep 16, 2020 by
johanneskoester
Open
1
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Issues list
Stop workflow (without error) if an output file is empty
bug
Something isn't working
#2891
opened May 22, 2024 by
davidecrs
snakemake --export-cwl doesn't actually export CWL
bug
Something isn't working
#2889
opened May 21, 2024 by
charmoniumQ
install snakemake using Something isn't working
pip install git+https://github.com/snakemake/snakemake
bug
#2885
opened May 20, 2024 by
liamxg
Progress report when downloading from storage provider
enhancement
New feature or request
#2883
opened May 19, 2024 by
ntessore
Ensure stable conda environments via pixi lockfile support
enhancement
New feature or request
#2880
opened May 17, 2024 by
irm-codebase
archive cli docs inconsistent with code
bug
Something isn't working
#2877
opened May 15, 2024 by
nate-d-olson
--singularity-args quotes not propagated to cluster job script
bug
Something isn't working
#2872
opened May 13, 2024 by
dkoppstein
Customize location of New feature or request
.snakemake
directory
enhancement
#2867
opened May 9, 2024 by
gipert
remove --cluster from v8.x
enhancement
New feature or request
#2866
opened May 8, 2024 by
conchoecia
False detection of formatting issues.
bug
Something isn't working
#2865
opened May 7, 2024 by
agbioinformatics
wrong python path is used when running python script with named conda environment
bug
Something isn't working
#2861
opened May 3, 2024 by
Marcel-Mueck
keep_local
does not keep remote files locally
bug
#2844
opened Apr 24, 2024 by
Hugovdberg
ModuleNotFoundError: No module named 'asyncore'
bug
Something isn't working
#2841
opened Apr 24, 2024 by
PandengWang
incompatibility with using Something isn't working
rules.rulename.output
and importing snakefile as a module, using use rule a from somemodule as a with...
bug
#2838
opened Apr 23, 2024 by
LukaP-BB
Bind current working directory to container
enhancement
New feature or request
#2837
opened Apr 23, 2024 by
fgvieira
Error when using wrappers and Something isn't working
use rule as
bug
#2836
opened Apr 23, 2024 by
fgvieira
carbon footprint in report
enhancement
New feature or request
#2834
opened Apr 22, 2024 by
daaaaande
Incorrect shell command executed when defined within a loop.
bug
Something isn't working
#2832
opened Apr 21, 2024 by
ethan-shanahan
--cluster-config BsubInvocation Error
bug
Something isn't working
#2828
opened Apr 19, 2024 by
suhridbuddha
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