install snakemake using pip install git+https://github.com/snakemake/snakemake

[liamxg]

Dear @johanneskoester,

pip install git+https://github.com/snakemake/snakemake
Collecting git+https://github.com/snakemake/snakemake
  Cloning https://github.com/snakemake/snakemake to /private/var/folders/q4/gvrdsnj94vl527nfhj25rxh40000gn/T/pip-req-build-k9xdgyck
  Running command git clone --filter=blob:none --quiet https://github.com/snakemake/snakemake /private/var/folders/q4/gvrdsnj94vl527nfhj25rxh40000gn/T/pip-req-build-k9xdgyck
  Resolved https://github.com/snakemake/snakemake to commit 3eeecc67e995e770e1812f294e8e26549d301ff3
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Installing backend dependencies ... done
  Preparing metadata (pyproject.toml) ... done
Collecting appdirs (from snakemake==8.11.6)
  Downloading appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
Collecting immutables (from snakemake==8.11.6)
  Downloading immutables-0.20-cp39-cp39-macosx_10_9_x86_64.whl.metadata (4.6 kB)
Collecting configargparse (from snakemake==8.11.6)
  Downloading ConfigArgParse-1.7-py3-none-any.whl.metadata (23 kB)
Collecting connection-pool>=0.0.3 (from snakemake==8.11.6)
  Downloading connection_pool-0.0.3.tar.gz (3.8 kB)
  Preparing metadata (setup.py) ... done
Collecting datrie (from snakemake==8.11.6)
  Downloading datrie-0.8.2.tar.gz (63 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 63.3/63.3 kB 572.4 kB/s eta 0:00:00
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Installing backend dependencies ... done
  Preparing metadata (pyproject.toml) ... done
Collecting docutils (from snakemake==8.11.6)
  Downloading docutils-0.21.2-py3-none-any.whl.metadata (2.8 kB)
Collecting gitpython (from snakemake==8.11.6)
  Downloading GitPython-3.1.43-py3-none-any.whl.metadata (13 kB)
Collecting humanfriendly (from snakemake==8.11.6)
  Downloading humanfriendly-10.0-py2.py3-none-any.whl.metadata (9.2 kB)
Requirement already satisfied: jinja2<4.0,>=3.0 in /Users/liam/opt/miniconda3/lib/python3.9/site-packages (from snakemake==8.11.6) (3.1.2)
Requirement already satisfied: jsonschema in /Users/liam/opt/miniconda3/lib/python3.9/site-packages (from snakemake==8.11.6) (3.2.0)
Requirement already satisfied: nbformat in /Users/liam/opt/miniconda3/lib/python3.9/site-packages (from snakemake==8.11.6) (5.9.0)
Requirement already satisfied: packaging in /Users/liam/opt/miniconda3/lib/python3.9/site-packages (from snakemake==8.11.6) (24.0)
Requirement already satisfied: psutil in /Users/liam/opt/miniconda3/lib/python3.9/site-packages (from snakemake==8.11.6) (5.9.5)
Collecting pulp<2.9,>=2.3.1 (from snakemake==8.11.6)
  Downloading PuLP-2.8.0-py3-none-any.whl.metadata (5.4 kB)
Requirement already satisfied: pyyaml in /Users/liam/opt/miniconda3/lib/python3.9/site-packages (from snakemake==8.11.6) (6.0)
Requirement already satisfied: requests<3.0,>=2.8.1 in /Users/liam/opt/miniconda3/lib/python3.9/site-packages (from snakemake==8.11.6) (2.31.0)
Collecting reretry (from snakemake==8.11.6)
  Downloading reretry-0.11.8-py2.py3-none-any.whl.metadata (5.5 kB)
Collecting smart-open<8.0,>=4.0 (from snakemake==8.11.6)
  Downloading smart_open-7.0.4-py3-none-any.whl.metadata (23 kB)
INFO: pip is looking at multiple versions of snakemake to determine which version is compatible with other requirements. This could take a while.
ERROR: Ignored the following versions that require a different python version: 7.0.1 Requires-Python >=3.11,<4.0; 7.0.2 Requires-Python >=3.11,<4.0; 7.0.3 Requires-Python >=3.11,<4.0; 8.0.0 Requires-Python >=3.11,<4.0; 8.0.1 Requires-Python >=3.11,<4.0; 8.0.2 Requires-Python >=3.11,<4.0; 8.1.0 Requires-Python >=3.11,<4.0; 8.1.1 Requires-Python >=3.11,<4.0; 8.1.2 Requires-Python >=3.11,<4.0; 8.1.3 Requires-Python >=3.11,<4.0; 8.2.0 Requires-Python >=3.11,<4.0; 9.0.0 Requires-Python >=3.11,<4.0; 9.0.1 Requires-Python <4.0,>=3.11; 9.0.2 Requires-Python <4.0,>=3.11; 9.1.0 Requires-Python <4.0,>=3.11; 9.1.1 Requires-Python <4.0,>=3.11
ERROR: Could not find a version that satisfies the requirement snakemake-interface-executor-plugins<10.0,>=9.1.0 (from snakemake) (from versions: 1.0.1, 1.1.0, 1.1.1, 1.1.2, 1.2.0, 2.0.0, 3.0.1, 3.0.2, 4.0.0, 4.0.1, 5.0.0, 5.0.1, 5.0.2, 6.0.0)
ERROR: No matching distribution found for snakemake-interface-executor-plugins<10.0,>=9.1.0

[liamxg]

@antunderwood

[fgvieira]

Have you tried installing the stable version (https://pypi.org/project/snakemake/):

pip install snakemake