Hi-C data processing

Init

1. Initiate the submodules (clone repositories)

git submodule init

git submodule update

2. Build docker containers

make all

Methods

Armatus

1. Prepare datafile

make armatus

2. Exec docker container

docker-compose exec armatus bash

3. How to build

chmod +x entrypoint.sh
./entrypoint.sh

4. Test

chmod +x test.sh
./test.sh

Arrowhead

1. Prepare datafile

make arrowhead

2. Exec docker container

docker-compose exec arrowhead bash

3. Test method

chmod +x test.sh
./test.sh