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Hi-C data processing

Init

  1. Initiate the submodules (clone repositories)
git submodule init

git submodule update
  1. Build docker containers
make all

Methods

Armatus

  1. Prepare datafile
make armatus
  1. Exec docker container
docker-compose exec armatus bash
  1. How to build
chmod +x entrypoint.sh
./entrypoint.sh
  1. Test
chmod +x test.sh
./test.sh

Arrowhead

  1. Prepare datafile
make arrowhead
  1. Exec docker container
docker-compose exec arrowhead bash
  1. Test method
chmod +x test.sh
./test.sh