Merge pull request #85 from oxfordmmm/vcf-subset-2.0.0 #395
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| name: Tests | |
| on: [push] | |
| jobs: | |
| build: | |
| name: Run Python Tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup timezone | |
| uses: zcong1993/setup-timezone@master | |
| with: | |
| timezone: UTC | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10' | |
| - name: Install Python dependencies | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| pip3 install . | |
| pip3 install black ruff mypy pandas-stubs typing_extensions types-tqdm types-pytz | |
| - name: Run format checks | |
| run: | | |
| black --check . | |
| ruff check gnomonicus | |
| mypy gnomonicus | |
| - name: Test with pytest | |
| run: | | |
| pytest --exitfirst --verbose --failed-first \ | |
| --cov=. --cov-report html |