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@oxfordmmm

Oxford MMM

Modernising Medical Microbiology

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  1. CompassCompact CompassCompact Public

    A compact version of Oxford Compass (Complete Pathogen Analysis Software Solution)

    Python 7 3

  2. tuberculosis_amr_catalogues tuberculosis_amr_catalogues Public

    Python 5

  3. gumpy gumpy Public

    Genetics with numpy

    Python 4 1

  4. gnomonicus gnomonicus Public

    Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants

    Python 4

  5. ncov2019-artic-nf ncov2019-artic-nf Public

    Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    Nextflow 3 2

  6. piezo piezo Public

    Python 2

Repositories

Showing 10 of 46 repositories
  • FN5 Public

    SNP matrix generation with caching to disk to allow fast reloading

    oxfordmmm/FN5’s past year of commit activity
    C++ 2 1 0 0 Updated Nov 14, 2024
  • labbox_backend Public

    The backend files for the LabBox application

    oxfordmmm/labbox_backend’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 3, 2024
  • gnomonicus Public

    Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants

    oxfordmmm/gnomonicus’s past year of commit activity
    Python 4 0 1 0 Updated Oct 9, 2024
  • grumpy Public

    Re-implementation of gumpy in rust for speed

    oxfordmmm/grumpy’s past year of commit activity
    Rust 2 0 0 0 Updated Oct 9, 2024
  • piezo Public
    oxfordmmm/piezo’s past year of commit activity
    Python 2 0 2 0 Updated Sep 10, 2024
  • labbox_frontend Public

    The front-end for the LabBox application

    oxfordmmm/labbox_frontend’s past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Sep 9, 2024
  • oxfordmmm/ukhsa-datafeeds-timeliness-anon’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Aug 21, 2024
  • oxfordmmm/tuberculosis_amr_catalogues’s past year of commit activity
    Python 5 0 0 0 Updated Aug 19, 2024
  • gumpy Public

    Genetics with numpy

    oxfordmmm/gumpy’s past year of commit activity
    Python 4 1 3 0 Updated Jul 24, 2024
  • oxfordmmm/flye_medaka_workflow’s past year of commit activity
    Nextflow 1 1 0 1 Updated Apr 19, 2024

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