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    15 repositories

    • SEMORE

      Public
      SEMORE is a multi-layered density-based clustering module to dissect biological assemblies and a morphology fingerprinting module for quantification by multiple geometric and kinetics-based descriptors.
      machine-learningfingerprintingsingle-molecule-imagingsingle-molecule-localization
      Python
      •0•5•0•0•Updated Sep 16, 2024Sep 16, 2024

    • hatzakislab.github.io

      Public
      Source for the group website
      CSS
      •0•1•2•5•Updated Jan 23, 2024Jan 23, 2024

    • POR-assays

      Public
      Python
      •0•0•0•0•Updated Jun 5, 2023Jun 5, 2023

    • Diffusional-Fingerprinting

      Public
      Python
      •
      MIT License
      •6•10•2•0•Updated Feb 27, 2023Feb 27, 2023

    • DeepFRET-Model

      Public
      Python
      •
      GNU General Public License v3.0
      •3•7•1•8•Updated Dec 8, 2022Dec 8, 2022

    • DeepFRET-GUI

      Public
      Python
      •
      GNU General Public License v3.0
      •5•9•10•0•Updated Aug 24, 2022Aug 24, 2022

    • Pomegranate_FRETanalysis

      Public
      Script for the analysis of FRET traces using pomegranate and in-house written code
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 18, 2022Aug 18, 2022

    • Dopamine-Manuscript

      Public
      signal integration, drift correction and rate fitting
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 25, 2022Mar 25, 2022

    • REPLOM-analysis-tool

      Public
      Python
      •0•0•0•0•Updated Nov 5, 2021Nov 5, 2021

    • SPARCLD

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 14, 2021Oct 14, 2021

    • liposome_intensity

      Public
      Python based script for extraction and analysis of .tif formatted image files. The script can extract the intensity from individual liposomes based in a changeable ROI size given initially and subtract local background
      Python
      •0•0•0•0•Updated Mar 13, 2020Mar 13, 2020

    • cell_analyzer_pyy

      Public
      Cell analyzer HEK293/PYY/eYFP: Python based script for extraction and analysis of .tif formatted image files. The script will identify cells on a image based on set thresholds and parameters. From this a mask will be created to extract the intensity from up to three channels, here corresponding to signal from membrane stain (blue), yellow fluore…
      Python
      •1•0•0•0•Updated Mar 13, 2020Mar 13, 2020

    • lipase_tracking

      Public
      Python Script for analysing .tif movies of lipases diffusing on a surface. Code used to make data for Bohr, S. S.-R. et al. Scientific Reports, 2019
      Python
      •0•0•0•0•Updated Mar 13, 2020Mar 13, 2020

    • fretti_standalone

      Public
      Python
      •0•0•0•0•Updated Mar 5, 2020Mar 5, 2020

    • nanobio1_2019

      Public
      Code to use in Nanobio1 course at UCPH, fall semester 2019
      MIT License
      •0•0•0•0•Updated Sep 6, 2019Sep 6, 2019