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DeepFRET-Model

Repository for the model training.

Original Repo with ongoing development: here

To reproduce publication model:

  1. Make sure your environment reflects requirement.txt
  2. Run generate_data.py and input the number of traces (we used 250k initially, which ends up being ~150k after balancing)
  3. Run train_model.py. Be sure to set exclude_alex_fret=False for the full model.

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