Zuber lab

All

11 repositories

crispr-mageck-nf
Public
Analyze CRISPR and shRNA functional genetic screening data
bioinformatics nextflow singularity crispr-cas9 shrna
Nextflow
•
MIT License
•5•8•1•0•Updated Nov 15, 2024Nov 15, 2024
dual-crispr-process-nf
Public
Process dual-sgRNA CRISPR functional genetic screening data.
Nextflow
•
MIT License
•1•0•0•0•Updated Nov 15, 2024Nov 15, 2024
crispr-process-nf
Public
Process CRISPR and shRNA functional genetic screening data
bioinformatics nextflow singularity crispr-cas9 shrna
Nextflow
•
MIT License
•1•3•1•0•Updated Oct 23, 2024Oct 23, 2024
vbcf-nf
Public
Retrieve Files from VBCF Sequencing Facility
nextflow bioinformatics-pipeline
Nextflow
•
MIT License
•1•1•0•0•Updated Oct 21, 2024Oct 21, 2024
Containers
Public
Repository of Makefiles for Docker containers
Dockerfile
•
GNU Affero General Public License v3.0
•1•0•0•0•Updated Apr 13, 2020Apr 13, 2020
crisprepo-shiny
Public
Shiny frontend for browsing screening data
R
•
GNU Affero General Public License v3.0
•0•1•0•0•Updated Jul 6, 2018Jul 6, 2018
crispr-nf
Public
Pre-processing of multiplexed CRISPR / shRNA Screens (deprecated)
nextflow bioinformatics-pipeline crispr-analysis
Nextflow
•
MIT License
•2•2•1•0•Updated Apr 23, 2018Apr 23, 2018
mageck-nf
Public
Statistical Analysis of multiplexed CRISPR / shRNA Screens using MAGeCK (deprecated)
docker singularity bioinformatics-pipeline crispr-analysis mageck nextflow
R
•
MIT License
•0•3•0•0•Updated Apr 23, 2018Apr 23, 2018
guidemapper-nf
Public
Annotate CRISPR and shRNA screening libraries
nextflow singularity bioinformatics-pipeline crispr
R
•
MIT License
•0•1•0•0•Updated Apr 11, 2018Apr 11, 2018
sra-nf
Public
Download Raw Reads from SRA Archive
nextflow bioinformatics-pipeline sratoolkit
Nextflow
•
MIT License
•0•0•0•0•Updated Feb 8, 2018Feb 8, 2018
palantir-shiny
Public
Shiny frontend for browsing and gene expression and screening data
docker-image screening shiny-apps rna-seq-analysis
R
•
GNU Affero General Public License v3.0
•0•0•1•0•Updated Dec 29, 2017Dec 29, 2017