guidemapper-nf

Annotate CRISPR and shRNA screening libraries

Installation

Install Nextflow following the instructions at https://www.nextflow.io/docs/latest/getstarted.html

The most convenient way is to install guidemapper-nf is to use nextflow's built-in 'pull' command

nextflow pull zuberlab/guidemapper-nf

Test

Run the pipeline with test data

nextflow run zuberlab/guidemapper-nf --inputDir test_input --parameters test_parameters.txt

Documentation

nextflow run zuberlab/guidemapper-nf --help

Credits

Nextflow: Paolo Di Tommaso - https://github.com/nextflow-io/nextflow