PiTex

PiTex is a tool aimed to help Ecologists classify and count Foraminifera from images obtained by microscope, using Machine Learning, Computer Vision and other tools.

Dependencies:

1. numpy & scipy (http://www.numpy.org, http://www.scipy.org)

2. opencv (http://opencv.org/)

3. scikit-learn (http://scikit-learn.org/stable/install.html)

System Architecture:

Results on Dataset:

Dataset	Positive	Negative	TN	TP	FN	FP	Parameters
Palmahim1	56	12,350	9,876 (80%)	55 (99%)	1	2047	Kernel:Polynomial, Degree:2, C:10^-5, Gamma:1
Palmahim1	56	12,350	10,259 (84%)	45 (83%)	10	2091	Kernel: Polynomial, Degree: 2, C: 10^-4, Gamma:1