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PiTex

PiTex is a tool aimed to help Ecologists classify and count Foraminifera from images obtained by microscope, using Machine Learning, Computer Vision and other tools.

Dependencies:

  1. numpy & scipy (http://www.numpy.org, http://www.scipy.org)

  2. opencv (http://opencv.org/)

  3. scikit-learn (http://scikit-learn.org/stable/install.html)

System Architecture:

System Architecture

Results on Dataset:

Dataset Positive Negative TN TP FN FP Parameters
Palmahim1 56 12,350 9,876 (80%) 55 (99%) 1 2047 Kernel:Polynomial, Degree:2, C:10^-5, Gamma:1
Palmahim1 56 12,350 10,259 (84%) 45 (83%) 10 2091 Kernel: Polynomial, Degree: 2, C: 10^-4, Gamma:1