Description
This repository contains a nextflow workflow for running mitochondrial analysis.
This workflow is heavily inspired by the gatk-workflows/gatk4-mitochondria-pipeline and by the epi2me-labs/wf-template.
Inputs
- Pairs of FASTQ file. One pair for each sample.
- Reference for human genome (GRCh38). Files are available here.
- .fasta, .dict, .fai, .ann, .amb, .sa, .pac, .alt