v0.1.2

Description

This repository contains a nextflow workflow for running mitochondrial analysis.

This workflow is heavily inspired by the gatk-workflows/gatk4-mitochondria-pipeline and by the epi2me-labs/wf-template.

Inputs

• Pairs of FASTQ file. One pair for each sample.
• Reference for human genome (GRCh38). Files are available here.
  • .fasta, .dict, .fai, .ann, .amb, .sa, .pac, .alt