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A set of useful helper functions for doing NGS analysis with snakemake.

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lcdblib

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lcdblib is a toolbox of functions and classes for working with genomic data. While developing code for other projects, if we decide something could be more generally useful then we add it to this package.

Installation

Installation is intended to be from conda, with the bioconda channel and dependencies set up:

conda install -c lcdb lcdblib

You may want to permanently add the lcdb channel to your .condarc to avoid specifiying it each time:

conda config --add channels lcdb

Then:

conda install lcdblib

or if it's already installed:

conda update lcdblib

Automated tests are run on travis-ci, and successful builds on the master branch are automatically uploaded to the lcdb conda channel.

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A set of useful helper functions for doing NGS analysis with snakemake.

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