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  1. lcdb-wf lcdb-wf Public

    Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis

    Python 20 17

  2. genomics-workshop-2018 genomics-workshop-2018 Public

    Repostory with materials for the 2018 LCDB Genomics Workshop

    HTML 4 2

  3. lcdb-test-data lcdb-test-data Public

    Test data creation and storage

    Python 2 1

  4. lcdb-workflows lcdb-workflows Public

    DEPRECATED. Please see https://github.com/lcdb/lcdb-wf

    Python 1

  5. lcdblib lcdblib Public

    A set of useful helper functions for doing NGS analysis with snakemake.

    Python 1 1

  6. lcdb-wrapper-tests lcdb-wrapper-tests Public

    Experimental Snakemake wrapper testing framework.

    Python 1

Repositories

Showing 10 of 10 repositories
  • lcdb-wf Public

    Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis

    lcdb/lcdb-wf’s past year of commit activity
    Python 20 17 64 18 Updated Dec 16, 2024
  • lcdb-wf-variant-calling-test-data Public

    Small data set for testing lcdb-wf variant calling workflow

    lcdb/lcdb-wf-variant-calling-test-data’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jun 2, 2023
  • lcdb-containers Public
    lcdb/lcdb-containers’s past year of commit activity
    Singularity 0 0 0 0 Updated May 13, 2023
  • github-action-testing Public

    testing grounds for github actions

    lcdb/github-action-testing’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Nov 29, 2020
  • lcdb-test-data-human Public

    Test data creation and storage (human version)

    lcdb/lcdb-test-data-human’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 21, 2020
  • lcdb-test-data Public

    Test data creation and storage

    lcdb/lcdb-test-data’s past year of commit activity
    Python 2 MIT 1 1 1 Updated Sep 15, 2020
  • lcdblib Public

    A set of useful helper functions for doing NGS analysis with snakemake.

    lcdb/lcdblib’s past year of commit activity
    Python 1 MIT 1 3 2 Updated Oct 2, 2019
  • lcdb-workflows Public

    DEPRECATED. Please see https://github.com/lcdb/lcdb-wf

    lcdb/lcdb-workflows’s past year of commit activity
    Python 1 MIT 0 7 2 Updated Apr 12, 2019
  • genomics-workshop-2018 Public

    Repostory with materials for the 2018 LCDB Genomics Workshop

    lcdb/genomics-workshop-2018’s past year of commit activity
    HTML 4 BSD-2-Clause 2 0 0 Updated Mar 12, 2018
  • lcdb-wrapper-tests Public

    Experimental Snakemake wrapper testing framework.

    lcdb/lcdb-wrapper-tests’s past year of commit activity
    Python 1 MIT 0 7 2 Updated Mar 22, 2017

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