Circall v1.0.0

06 July 2022: version 1.0.0

• Re-organization of the software package => user-friendly version with Docker.
• Speed up file reading in R with data.table package.
• Fix bugs in hg38 annotation.
• Output format with an additional column: junction_FPM - junction fragment per million .i.e, junction_fragment_count normalized by million fragment unit.
• Default option "-td" changed to FALSE

NOTE:

• Tutorial has been changed for Docker running tutorial in this version.
• An old version can be found in the sub-directory Circall_v0.1.0.

Circall v0.1.0

19 June 2020: version 0.1.0
First submission

Circall is a novel method for fast and accurate discovery of circular RNAs from paired-end RNA-sequencing data. The method controls false positives by two-dimensional local false discovery method and employs quasi-mapping for fast and accurate alignments. The details of Circall are described in its manuscript. In this page, we present the Circall tool and how to use it.