dev --> staging #1384
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dev --> staging #1384
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* Making sure temporary credentials or keys don't get pushed by accident * Adding a GHA that can authenticate using a service account in GCP * Plugging in the magical auth system to finally connect to Terra * Adding quotes in vars. Disabling PR trigger to avoid duplicated runs for now. * Fixing newline. Adding debug lines * Debugging why the access token is not being accepted * Adding time to token validity. Maybe it expired before getting used * Removing printings * retrigger * Retrigger * Trying out a different token * Setting back to access token * try setting scopes directly * Removing debug flag for cleaner output. * Adding getting submission list * Changing to warp tests * Switching back * Adding Firecloud API script * Trying out new py class * Changing variables to get this pipeline to run automatically * Plugging in actual values to test this. Increasing polling intervals * Fixing path mistake * Commenting out test code. Fixing error with memoryRetryMultiplier * Returning workflowID * Setting to unbuffered so we see printings from py * Adding functionality to handle multiple workflows in a single run. * Trying to parse the monitorSubmission properly. * Trying to parse the monitorSubmission properly. * Trying to parse the monitorSubmission properly. * Trying to parse the monitorSubmission properly. * It looks like python printings messes up bash inputs. Cleaning it up. * Creating a map of workflows and their statuses. * Creating a map of workflows and their statuses. * Adding summary printings * Parameterizing call_cache * Adding a summary in the event of a failure. * Better summary printing. Covering both success and failure. * Removing stderr redirection to see where things are failing * Finally found what was wrong. Token was expiring before finishing the polling step. Setting it back to the default, 1 hour. * Parsing the outputs dictionary properly. * One more try with the parsing of outputs. Adding an id to pipeline run step * Handling int to str in json * Better summary formatting * Better summary formatting * Some icons. * Adding note to make sure folks don't change the magic string * Adding proper triggers * Removing test trigger --------- Co-authored-by: Jack Warren <[email protected]>
added atac_nhash_id to multiome sci test json
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jessicaway
approved these changes
Oct 9, 2024
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dev --> staging