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dev -> staging #1368

Merged
merged 1 commit into from
Sep 10, 2024
Merged

dev -> staging #1368

merged 1 commit into from
Sep 10, 2024

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nikellepetrillo
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@nikellepetrillo nikellepetrillo commented Sep 10, 2024

  • updating gatk to version 4.6.0.0

Description

Give your PR a concise yet descriptive title.
Please explain the changes you made here.
Explain the motivation for making this change. What existing problem does the pull request solve?
Mention any issues fixed, addressed, or otherwise related to this pull request, including issue numbers or hard links for issues in other repos.
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Checklist

If you can answer "yes" to the following items, please add a checkmark next to the appropriate checklist item(s) and notify our WARP documentation team by tagging either @ekiernan or @kayleemathews in a comment on this PR.

  • Did you add inputs, outputs, or tasks to a workflow?
  • Did you modify, delete or move: file paths, file names, input names, output names, or task names?
  • If you made a changelog update, did you update the pipeline version number?

* updating gatk to version 4.6.0.0

* making ultima tests better

* wirign through sample names

* fixing new ultima tests

* oops

* more outputs from VerifyNA12878

* removing Verbose VCF check from Ultima tests for now

* cleaning up VerifyNA12878 outputs

* missed one after rebase

* temporary change to adapt CompareVCFsVerbosely to expected differneces

* Updated pipeline_versions.txt with all pipeline version information

* turn off DP check

* Updated pipeline_versions.txt with all pipeline version information

* updating VCFComparator

* updating CompareVcfsVerbosely again

* typo

* Updated pipeline_versions.txt with all pipeline version information

* Updated pipeline_versions.txt with all pipeline version information

* cleaning up verboseVCF checks

* changelogs

* Updated pipeline_versions.txt with all pipeline version information

* updated changlogs and wdl versions

* Updated pipeline_versions.txt with all pipeline version information

* Updated pipeline_versions.txt with all pipeline version information

---------

Co-authored-by: GitHub Action <[email protected]>
Co-authored-by: ekiernan <[email protected]>
Co-authored-by: Nikelle Petrillo <[email protected]>
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DO NOT SQUASH MERGE!!!

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🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/staging':
All changelog files are valid for this release.

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🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@nikellepetrillo nikellepetrillo merged commit cca1c5d into staging Sep 10, 2024
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4 participants