add credits

broadinstitute · Oct 16, 2024 · af32149 · af32149
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commit af32149
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diff --git a/beta-pipelines/skylab/slidetags/SlideTags.wdl b/beta-pipelines/skylab/slidetags/SlideTags.wdl
@@ -1,6 +1,6 @@
 version 1.0
 
-import "spatial-count/spatial-count.wdl" as SpatialCount
+import "scripts/spatial-count.wdl" as SpatialCount
 
 workflow SlideTags {
 

diff --git a/beta-pipelines/skylab/slidetags/scripts/CREDITS.md b/beta-pipelines/skylab/slidetags/scripts/CREDITS.md
@@ -0,0 +1,11 @@
+# Credits
+
+This project uses code from the following sources:
+
+- **Spatial Count Workflow** 
+ URL: [https://github.com/MacoskoLab/Macosko-Pipelines/blob/main/spatial-count/spatial-count.wdl](https://github.com/MacoskoLab/Macosko-Pipelines/blob/main/spatial-count/spatial-count.wdl) 
+ This code was adapted and modified from the Macosko Lab's pipeline repository.
+
+Additional modifications include output handling and script download changes.
+
+Please refer to the original source for the full context of the workflow.
diff --git a/...slidetags/spatial-count/spatial-count.wdl → ...kylab/slidetags/scripts/spatial-count.wdl b/...slidetags/spatial-count/spatial-count.wdl → ...kylab/slidetags/scripts/spatial-count.wdl
@@ -13,10 +13,9 @@ task count {
  set -x
  # Taken from https://github.com/MacoskoLab/Macosko-Pipelines/blob/main/spatial-count/spatial-count.wdl
  # Modified to include the outputs
- # Last commit: eaebb9060fb05ececd980fd62438487d07990596 
-
+
  echo "<< starting spatial-count >>"
- dstat --time --cpu --mem --disk --io --freespace --output spatial-count.usage &> /dev/null &
+ ## removed dstat --time --cpu --mem --disk --io --freespace --output spatial-count.usage &> /dev/null &
 
  gcloud config set storage/process_count 16
  gcloud config set storage/thread_count 2