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ENH: add action to filter Kraken reports #209

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misialq opened this issue Oct 8, 2024 · 0 comments · May be fixed by #212
Open

ENH: add action to filter Kraken reports #209

misialq opened this issue Oct 8, 2024 · 0 comments · May be fixed by #212
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enhancement New feature or request

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@misialq
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misialq commented Oct 8, 2024

Is your feature request related to a problem? Please describe.
If some samples have only unclassified reads, passing the artifact to estimate-bracken action results in an error "Error: no reads found. Please check your Kraken report".

Describe the solution you'd like
It would be useful to have an action similar to filter-contigs or filter-mags which will allow filtering reports based on criteria but also simply removal of samples without any classification results.

Additional context
For the linked QIIME 2 Forum discussion see here.

@misialq misialq added the enhancement New feature or request label Oct 8, 2024
@VinzentRisch VinzentRisch linked a pull request Oct 21, 2024 that will close this issue
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