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Is your feature request related to a problem? Please describe.
If some samples have only unclassified reads, passing the artifact to estimate-bracken action results in an error "Error: no reads found. Please check your Kraken report".
Describe the solution you'd like
It would be useful to have an action similar to filter-contigs or filter-mags which will allow filtering reports based on criteria but also simply removal of samples without any classification results.
Additional context
For the linked QIIME 2 Forum discussion see here.
The text was updated successfully, but these errors were encountered:
Is your feature request related to a problem? Please describe.
If some samples have only unclassified reads, passing the artifact to
estimate-bracken
action results in an error "Error: no reads found. Please check your Kraken report".Describe the solution you'd like
It would be useful to have an action similar to
filter-contigs
orfilter-mags
which will allow filtering reports based on criteria but also simply removal of samples without any classification results.Additional context
For the linked QIIME 2 Forum discussion see here.
The text was updated successfully, but these errors were encountered: