chore: new version

SysBioChalmers · Sep 14, 2021 · 26005b7 · 26005b7
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diff --git a/README.md b/README.md
@@ -39,7 +39,7 @@ If you use Mouse1, Rat1, Zebrafish1, Fruitfly1, or Worm1 in your research, pleas
 
 |Taxonomy | Template Model | Reactions | Metabolites| Genes |
 | ------------- |:-------------:|:-------------:|:-------------:|:-----:|
-|_Homo sapiens_ | HMR2, Recon3D, iHsa| 13081| 8371| 3625|
+|_Homo sapiens_ | HMR2, Recon3D, iHsa| 13078| 8370| 3625|
 
 
 ### Administration

diff --git a/model/Human-GEM.mat b/model/Human-GEM.mat
diff --git a/model/Human-GEM.txt b/model/Human-GEM.txt
@@ -26,16 +26,13 @@ MAR04375 MAM01690c + MAM01939c <=> MAM01841c ENSG00000109107 or ENSG0000013687
 MAR04377 MAM01841c + MAM02040c -> MAM01845c + MAM02751c ENSG00000130957 or ENSG00000165140 0.00 1000.00 0.00
 MAR04381 MAM01845c <=> MAM01968c ENSG00000105220 -1000.00 1000.00 0.00
 MAR04391 MAM01690c <=> MAM01939c ENSG00000111669 -1000.00 1000.00 0.00
-MAR04394 MAM01371c + MAM01965c -> MAM01285c + MAM01968c + MAM02039c ENSG00000106633 or ENSG00000156510 or ENSG00000156515 or ENSG00000159322 or ENSG00000159399 or ENSG00000160883 0.00 1000.00 0.00
+MAR04394 MAM01371c + MAM01965c -> MAM01285c + MAM01968c + MAM02039c ENSG00000106633 or ENSG00000156510 or ENSG00000156515 or ENSG00000159399 or ENSG00000160883 0.00 1000.00 0.00
 MAR04396 MAM01967c <=> MAM01968c ENSG00000079739 or ENSG00000154330 or ENSG00000169299 -1000.00 1000.00 0.00
 MAR04521 MAM01968r + MAM02040r -> MAM01965r + MAM02751r ENSG00000131482 or ENSG00000141349 or ENSG00000152254 0.00 1000.00 0.00
 MAR06410 MAM02039m + MAM02393m + MAM02819m -> MAM01596m + MAM02869m ( ENSG00000131828 and ENSG00000168291 ) or ( ENSG00000163114 and ENSG00000168291 ) 0.00 1000.00 0.00
 MAR06412 MAM01597m + MAM02869m -> MAM01261m + MAM01701m ( ENSG00000091140 and ENSG00000131828 and ENSG00000150768 and ENSG00000168291 ) or ( ENSG00000091140 and ENSG00000150768 and ENSG00000163114 and ENSG00000168291 ) 0.00 1000.00 0.00
 MAR07745 MAM01388c <=> MAM01965c ENSG00000143891 -1000.00 1000.00 0.00
-MAR07746 MAM01371c + MAM01388c -> MAM01285c + MAM01389c + MAM02039c ENSG00000106633 or ENSG00000156510 or ENSG00000156515 or ENSG00000159399 or ENSG00000160883 0.00 1000.00 0.00
-MAR07747 MAM01285c + MAM01388c -> MAM01334c + MAM01389c + MAM02039c ENSG00000159322 0.00 1000.00 0.00
-MAR07748 MAM01389c <=> MAM01968c ENSG00000105220 -1000.00 1000.00 0.00
-MAR07749 MAM01389c <=> MAM01845c ENSG00000105220 -1000.00 1000.00 0.00
+MAR07747 MAM01285c + MAM01965c -> MAM01334c + MAM01968c + MAM02039c ENSG00000159322 0.00 1000.00 0.00
 MAR08360 MAM01796p + MAM02041p -> MAM01249p + 2 MAM02040p ENSG00000121691 0.00 1000.00 0.00
 MAR08652 MAM01420r + MAM01965r -> MAM01596r + MAM01968r + MAM02578r ENSG00000131482 or ENSG00000141349 or ENSG00000152254 0.00 1000.00 0.00
 MAR08757 MAM01796c + MAM02039c + MAM02555c + MAM02630c -> MAM01249c + 2 MAM02040c + MAM02554c ENSG00000130649 0.00 1000.00 0.00

diff --git a/model/Human-GEM.xlsx b/model/Human-GEM.xlsx
diff --git a/model/Human-GEM.xml b/model/Human-GEM.xml
diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml
@@ -3,8 +3,8 @@
 - metaData:
  short_name: "Human-GEM"
  full_name: "Generic genome-scale metabolic model of Homo sapiens"
- version: "1.9.0"
- date: "2021-08-12"
+ version: "1.10.0"
+ date: "2021-09-14"
  authors: "Jonathan Robinson, Hao Wang, Pierre-Etienne Cholley, Pinar Kocabas"
  email: "[email protected]"
  organization: "Chalmers University of Technology"

diff --git a/model/dependencies.txt b/model/dependencies.txt
@@ -1,4 +1,4 @@
 MATLAB 9.8.0.1323502 (R2020a)
 libSBML 5.17.0
-RAVEN_toolbox commit 202087d
-COBRA_toolbox commit 25dbea4
+RAVEN_toolbox commit 2c9e583
+COBRA_toolbox 3.2
diff --git a/version.txt b/version.txt
@@ -1 +1 @@
-1.9.0
+1.10.0