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62 Open 1,782 Closed
62 Open 1,782 Closed
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Issues list

Process 'SpecLibGen' finished, exit code: 1 Process returned non-zero exit code, stopping speclib
#1979 opened Jan 14, 2025 by lzw150
@guoci
4
Missing "combined_protein.tsv" File in Results Directory
#1978 opened Jan 13, 2025 by FragpipeIssue
@fcyu
6
The windows version does not appear to read “.raw” files directly
#1976 opened Jan 13, 2025 by Liujie-pro
@fcyu
1
Error in reading frames diaPASEF data
#1975 opened Jan 11, 2025 by Bron278
@fcyu
2
Spectral Library required for DIA-PASEF data analysis MSBooster
#1970 opened Jan 9, 2025 by Kingswood79
@fcyu @yangkl96
13
Error Loading Bruker .d File in FragPipe
#1965 opened Jan 3, 2025 by elena-atanasoska
@fcyu
4
DIA_Speclib_Quant cannot pass PhilosopherFilter
#1963 opened Jan 3, 2025 by bingnanzhao
5
MSFragger - ValueError: too many values to unpack
#1960 opened Dec 30, 2024 by Evan-Raymond
@guoci
4
TMT-Integrator doesn't allow for negative mass PTM's
#1954 opened Dec 19, 2024 by ethangilmore
@fcyu
4
Bioconda package for fragpipe last version?
#1896 opened Nov 23, 2024 by rolivella
2
Isobaric label annotation
#1895 opened Nov 22, 2024 by cutleraging
@fcyu
2
DIA_SpecLib_Quant_Phospho_diaPASEF Sitereport
#1860 opened Nov 3, 2024 by dh2305
@fcyu
17
A bug in DIA-NN 1.9.2 broke MSBooster MSBooster
#1852 opened Oct 30, 2024 by benqhan
@fcyu @yangkl96
3
DIA_spec_diaPASEF DIANN output pg file did not contain protein name
#1831 opened Oct 16, 2024 by singhsk2622
@fcyu
2
Process 'DIA-NN: Propagate information' finished, exit code: 1
#1815 opened Oct 4, 2024 by Shinya-Watanabe
@fcyu
12
Protein coverage calculation
#1810 opened Oct 2, 2024 by apsteinberg
@fcyu @anesvi
5
Combined unique peptides column is missing in combined_proteins.tsv
#1808 opened Oct 2, 2024 by SamueldelaCamaraFuentes
@fcyu
DIA db split option split database
#1793 opened Sep 24, 2024 by liorlobel
@guoci
1
PTM Prophet error crashes run
#1781 opened Sep 13, 2024 by Shinya-Watanabe
@fcyu
14
Issue with MSFragger interface with Koina Server MSBooster
#1775 opened Sep 9, 2024 by BenSamy2020
@yangkl96
22
How to set a modification not C-term?
#1763 opened Aug 31, 2024 by a995752924
@fcyu
3
MSFraggerGlyco to Skyline document enhancement
#1759 opened Aug 29, 2024 by juank1892
@dpolasky
4
Can we get support for crosslinking MS?
#1738 opened Aug 20, 2024 by bluemooninvestor
PTM-Shephard outputs PTM-Shepherd
#1728 opened Aug 14, 2024 by lbeer272
@dpolasky @danielgeiszler
1
BrokenProcessPool split database
#1715 opened Aug 7, 2024 by sarag723
@guoci @fcyu
6
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