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Error in reading frames diaPASEF data #1975

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Bron278 opened this issue Jan 11, 2025 · 2 comments
Open

Error in reading frames diaPASEF data #1975

Bron278 opened this issue Jan 11, 2025 · 2 comments
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@Bron278
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Bron278 commented Jan 11, 2025

- Upload your log file
(If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the zipped file by drag & drop here.)

- Describe the issue or question:
Hi,

Recently I've been having an issue where fragpipe reports that it cannot read a frame or it cannot read a range within a frame. The files still finish searching but it's just reporting this new error which I have not seen before and I'm wondering what is going on or if the files need to be searched again. I'm running the DIA_speclib_quant_diapasef workflow, labeled my files as DIA-Quant (they would not run with just DIA checked) and attached a predicted spectral library under the "Quant (DIANN)" tab.
Screenshot 2025-01-11 at 11 12 19 AM

@fcyu fcyu self-assigned this Jan 11, 2025
@fcyu
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fcyu commented Jan 11, 2025

It seems that part of your .d data was corrupted. The error was reported by DIA-NN. If you like, please create a post in https://github.com/vdemichev/DiaNN/issues

Thanks,

Fengchao

@Bron278
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Bron278 commented Jan 11, 2025

Okay will do, thank you!

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