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@KatherLab

Kather Lab at EKFZ / TU Dresden

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  1. HIA HIA Public

    Histopathology Image Analysis

    Python 92 17

  2. marugoto marugoto Public

    Tools to build deep learning pipelines.

    Python 90 29

  3. STAMP STAMP Public

    Solid Tumor Associative Modeling in Pathology

    Python 48 23

  4. deepmed deepmed Public

    Python 46 8

  5. preProcessing preProcessing Public

    Python 43 13

  6. dl-mri dl-mri Public

    Deep Learning MRI image analysis

    Python 37 8

Repositories

Showing 10 of 41 repositories
  • mopadi Public

    MOrphing histoPAthology DIffusion models for explainability of AI pipelines in medical image analysis.

    KatherLab/mopadi’s past year of commit activity
    Python 3 0 0 0 Updated Dec 20, 2024
  • MediSwarm Public

    MediSwarm is an open-source project for advancing medical deep learning using swarm intelligence and NVFlare. Developed by the Odelia consortium, it ensures data privacy through federated learning, enabling collaborative, decentralized model training across institutions for improved medical research and applications.

    KatherLab/MediSwarm’s past year of commit activity
    Python 7 MIT 0 9 3 Updated Dec 20, 2024
  • LLMAIx Public

    Document Information Extraction & Anonymization using local LLMs

    KatherLab/LLMAIx’s past year of commit activity
    Python 25 AGPL-3.0 6 0 0 Updated Dec 17, 2024
  • prompt_injection_attacks Public
    KatherLab/prompt_injection_attacks’s past year of commit activity
    Python 1 0 0 0 Updated Dec 17, 2024
  • COBRA Public

    COntrastive Biomarker Representation Alignment (COBRA)

    KatherLab/COBRA’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Dec 16, 2024
  • patho_prompt_injection Public
    KatherLab/patho_prompt_injection’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Dec 10, 2024
  • swarm-learning-hpe Public

    Experimental repo for Odelia project based on HPE platform. This repo contains multiple models for histopathology and radiology training.

    KatherLab/swarm-learning-hpe’s past year of commit activity
    Python 13 MIT 1 29 1 Updated Dec 9, 2024
  • genml Public

    This is a pipeline of feature extraction for genomics mutation using foundation models.

    KatherLab/genml’s past year of commit activity
    Python 2 0 0 0 Updated Dec 5, 2024
  • STAMP-Benchmark Public Forked from KatherLab/STAMP

    Solid Tumor Associative Modeling in Pathology

    KatherLab/STAMP-Benchmark’s past year of commit activity
    Python 0 MIT 23 0 0 Updated Dec 2, 2024
  • HNSCC_FM_MIL_study Public

    Repository for data extraction and model extraction alongside model objects for the paper "End-to-end prediction of clinical outcomes in head and neck squamous cell carcinoma with foundation model-based multiple instance learning" by Meneghetti et al. 2025

    KatherLab/HNSCC_FM_MIL_study’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 30, 2024
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