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## \[2023+\]

* **<u>Cao, X.</u>**, Zhang, S., & Sha, Q.\* (2023+). A novel method for multiple phenotype association studies based on genotype and phenotype network. *Submitted in August 2023*. [bioRxiv](https://doi.org/10.1101/2023.02.23.529687) [software](https://github.com/xueweic/GPN)

* **<u>Cao, X.</u>**\#, Keyak, J.H.\#, Sigurdsson, S., Zhao, C., Zhou, W., Liu, A., Lang, T.F., Deng, H.W., Guðnason, V.\* and Sha, Q.\* (2023+). A New Hip Fracture Risk Index Derived from FEA-Computed Proximal Femur Fracture Loads and Energies-to-Failure. *In revision at Osteoporosis International*. [arXiv](https://arxiv.org/abs/2210.01032)

* Xie, H., **<u>Cao, X.</u>**, Zhang, S., Sha, Q. (2023+). Joint analysis of multiple phenotypes for extremely unbalanced case-control association studies using multi-layer network. *In revision at Bioinformatics*.

* Zhao, C.\#, Keyak, J.H.\#, **<u>Cao, X.</u>**, Sha, Q., Wu, L., Luo, Z., Zhao, L., Tian, Q., Qiu, C., Su, R., Shen, H., Deng, H.W.\*, Zhou, W.\* (2023+). Multi-view information fusion using multi-view variational autoencoders to predict proximal femoral strength. *Submitted in June 2023*. [arXiv](https://arxiv.org/abs/2210.00674)

* Zhao, C., Liu, A., Zhang, X., **<u>Cao, X.</u>**, Ding, Z., Sha, Q., Shen, H., Deng, H.W.\*, Zhou, W.\* CLCLSA: Cross-omics Linked embedding with Contrastive Learning and Self Attention for multi-omics integration with incomplete multi-omics data. 2023+. \textit{Submitted in August 2023}. [arXiv](https://arxiv.org/abs/2304.05542)

* **<u>Cao, X.</u>**\#, Zhu, L.\#, Liang, X., Zhang, S., Sha, Q.\* (2023+). Constructing genotype and phenotype network helps reveal disease heritability and phenome-wide association studies. *Will be submitted soon* [software](https://github.com/xueweic/GPN)

* Zhu, L., Yan, S., **<u>Cao, X.</u>**, Sha, Q., Zhang, S.\* (2023+). Integrating external controls by regression calibration for genome-wide association study. *Will be submitted soon*
* **<u>Cao, X.</u>**\#, Keyak, J.H.\#, Sigurdsson, S., Zhao, C., Zhou, W., Liu, A., Lang, T.F., Deng, H.W., Guðnason, V.\* & Sha, Q.\* (2023+). A New Hip Fracture Risk Index Derived from FEA-Computed Proximal Femur Fracture Loads and Energies-to-Failure. *In revision at Osteoporosis International*. [arXiv](https://arxiv.org/abs/2210.01032)
* Xie, H., **<u>Cao, X.</u>**, Zhang, S. & Sha, Q. (2023+). Joint analysis of multiple phenotypes for extremely unbalanced case-control association studies using multi-layer network. *In revision at Bioinformatics*.
* Zhao, C.\#, Keyak, J.H.\#, **<u>Cao, X.</u>**, Sha, Q., Wu, L., Luo, Z., Zhao, L., Tian, Q., Qiu, C., Su, R., Shen, H., Deng, H.W.\* & Zhou, W.\* (2023+). Multi-view information fusion using multi-view variational autoencoders to predict proximal femoral strength. *Submitted in June 2023*. [arXiv](https://arxiv.org/abs/2210.00674)
* Zhao, C., Liu, A., Zhang, X., **<u>Cao, X.</u>**, Ding, Z., Sha, Q., Shen, H., Deng, H.W.\* & Zhou, W.\* CLCLSA: Cross-omics Linked embedding with Contrastive Learning and Self Attention for multi-omics integration with incomplete multi-omics data. 2023+. \textit{Submitted in August 2023}. [arXiv](https://arxiv.org/abs/2304.05542)
* **<u>Cao, X.</u>**\#, Zhu, L.\#, Liang, X., Zhang, S. & Sha, Q.\* (2023+). Constructing genotype and phenotype network helps reveal disease heritability and phenome-wide association studies. *Will be submitted soon* [software](https://github.com/xueweic/GPN)
* Zhu, L., Yan, S., **<u>Cao, X.</u>**, Sha, Q. & Zhang, S.\* (2023+). Integrating external controls by regression calibration for genome-wide association study. *Will be submitted soon*

## \[2023\]
* **<u>Cao, X.</u>**\#, Zhang, L.\#, Islam, M.K., Zhao, M., He, C., Zhang, K., Liu, S., Sha, Q.\* & Wei, H.\*, 2023. TGPred: efficient methods for predicting target genes of a transcription factor by integrating statistics, machine learning and optimization. *NAR Genomics and Bioinformatics*, 5(3), p.lqad083. [doi](https://doi.org/10.1093/nargab/lqad083)
*

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