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1. Hybrid-sequencing-workflow Hybrid-sequencing-workflow Public

   This code is for processing the hybrid sequencing data from maize, utilizing the RNA-seq data to correct and check the whole chain of splicing junction of reads identified in PacBio-sequencing.

   Python 1

2. ddRAD_enzyme_selection ddRAD_enzyme_selection Public

   Python

3. pipelines_for_seq_data_trim pipelines_for_seq_data_trim Public

   Python

4. restriction_site_filter restriction_site_filter Public

   Filter out reads without correct restriction sites

5. pipelines pipelines Public

   Pipelines for precessing a batch of files automatically.

   Python

6. vcf_proc vcf_proc Public

   Scripts used for processing vcf files.

   Python