use Codacy action

.github/workflows/build-linux.yml

@@ -69,18 +69,19 @@ jobs:
  - name: Run Tests with pytest
  run: python -m pytest -v --cov=pyani --cov-report=xml:.coverage-linux-${{ matrix.python-version }}.xml
 
- - name: Upload coverage Results
+ - name: Store coverage Results
  uses: actions/upload-artifact@v4
  with:
  name: test-coverage-linux-${{ matrix.python-version }}
  path: .coverage-linux-${{ matrix.python-version }}.xml
  retention-days: 3
  if: ${{ always() }}
 
- - name: Codacy Coverage Report
- run: 
- bash <(curl -Ls https://coverage.codacy.com/get.sh) report \
- -r .coverage-linux-${{ matrix.python-version }}.xml
+ - name: Codacy Coverage Reporter
+ uses: codacy/codacy-coverage-reporter-action@v1
+ with:
+ project-token: ${{ secrets.CODACY_PROJECT_TOKEN }}
+ coverage-reports: .coverage-linux-${{ matrix.python-version }}.xml
  if: ${{ always() }}
 
  - name: Codecov Coverage Report

.github/workflows/build-macos.yml

@@ -69,7 +69,7 @@ jobs:
  - name: Run Tests with pytest
  run: python -m pytest -v --cov=pyani --cov-report=xml:.coverage-macos-${{ matrix.python-version }}.xml
 
- - name: Upload coverage results
+ - name: Store coverage results
  uses: actions/upload-artifact@v4
  with:
  name: test-coverage-macos-${{ matrix.python-version }}

Makefile

@@ -33,7 +33,7 @@ setup_env_macos: setup_conda setup_conda_macos setup_pip
  @pre-commit install
  @pip install -U -e .
 
-setup_env_macos: setup_conda setup_conda_linux setup_pip
+setup_env_linux: setup_conda setup_conda_linux setup_pip
  @pre-commit install
  @pip install -U -e .