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Read/write index #254

Merged
merged 9 commits into from
Jun 26, 2024
Merged

Read/write index #254

merged 9 commits into from
Jun 26, 2024

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bkille
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@bkille bkille commented Jun 24, 2024

  • Implements index saving/loading
  • --mm-index FILE will read the index saved at FILE if FILE exists, otherwise it will construct the index and write it to FILE for future use.
  • The index can be overwritten with --overwrite-mm-index.
  • wfmash will exit if the CLI parameters do not match those in the the saved index. In particular, if the segment length, sketch size, or kmer size are different.

@ekg ekg merged commit 44d2ba0 into waveygang:main Jun 26, 2024
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2 participants