fixed broken test

vsbuffalo · Feb 8, 2024 · 57035ee · 57035ee
1 parent 685e34b
commit 57035ee
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Showing 3 changed files with 300 additions and 2 deletions.
diff --git a/Cargo.toml b/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "recmap"
-version = "0.1.0"
+version = "0.1.1"
 edition = "2021"
 license = "MIT"
 authors = ["Vince Buffalo <[email protected]>"]

diff --git a/src/recmap.rs b/src/recmap.rs
@@ -409,7 +409,7 @@ mod tests {
  "chr2".to_string() => 6004443,
  "chr3".to_string() => 6026894,
  };
- let rec_map = RecMap::from_hapmap("tests/data/decode_2010_test_map.txt", seqlens).unwrap();
+ let rec_map = RecMap::from_hapmap("tests_data/decode_2010_test_map.txt", seqlens).unwrap();
 
  let dir = tempdir().unwrap();
  let output_path = dir.path().join("output.tsv");

diff --git a/tests_data/decode_2010_test_map.txt b/tests_data/decode_2010_test_map.txt
@@ -0,0 +1,298 @@
+Chromosome Position(bp) Rate(cM/Mb)
+chr1 6000669 0.746595
+chr1 6010669 2.023292
+chr1 6020669 1.463050
+chr1 6030669 0.000014
+chr1 6040669 3.273815
+chr1 6050669 5.538514
+chr1 6060669 5.676241
+chr1 6070669 5.214263
+chr1 6080669 3.524091
+chr1 6090669 2.562367
+chr1 6100669 0.000000
+chr1 6110669 0.000000
+chr1 6120669 0.560013
+chr1 6130669 7.912390
+chr1 6140669 7.182596
+chr1 6150669 0.000030
+chr1 6160669 0.179823
+chr1 6170669 0.984741
+chr1 6180669 6.985398
+chr1 6190669 1.181489
+chr1 6200669 0.980045
+chr1 6210669 0.000001
+chr1 6220669 0.000005
+chr1 6230669 0.000002
+chr1 6240669 0.195617
+chr1 6250669 10.79933
+chr1 6260669 4.923994
+chr1 6270669 1.010404
+chr1 6280669 0.000000
+chr1 6290669 0.130776
+chr1 6300669 0.223054
+chr1 6310669 0.223054
+chr1 6320669 0.103122
+chr1 6330669 0.001269
+chr1 6340669 0.001269
+chr1 6350669 0.001269
+chr1 6360669 0.001269
+chr1 6370669 0.001269
+chr1 6380669 0.001323
+chr1 6390669 0.001615
+chr1 6400669 0.009023
+chr1 6410669 0.048591
+chr1 6420669 3.311965
+chr1 6430669 3.806940
+chr1 6440669 2.753425
+chr1 6450669 3.987139
+chr1 6460669 2.142400
+chr1 6470669 2.211751
+chr1 6480669 2.826066
+chr1 6490669 0.722332
+chr1 6500669 3.262397
+chr1 6510669 0.888024
+chr1 6520669 0.000000
+chr1 6530669 0.000000
+chr1 6540669 0.000000
+chr1 6550669 0.000000
+chr1 6560669 1.188989
+chr1 6570669 2.617326
+chr1 6580669 0.000000
+chr1 6590669 0.000000
+chr1 6600669 0.000000
+chr1 6610669 0.000000
+chr1 6620669 0.000000
+chr1 6630669 0.000000
+chr1 6640669 0.031676
+chr1 6650669 0.041180
+chr1 6660669 0.047496
+chr1 6670669 0.060266
+chr1 6680669 0.301481
+chr1 6690669 0.360697
+chr1 6700669 0.000000
+chr1 6710669 0.000000
+chr1 6720669 2.421823
+chr1 6730669 0.000000
+chr1 6740669 0.000000
+chr1 6750669 0.030975
+chr1 6760669 0.267138
+chr1 6770669 0.128701
+chr1 6780669 0.070365
+chr1 6790669 0.070365
+chr1 6800669 0.005981
+chr1 6810669 0.000000
+chr1 6820669 0.000000
+chr1 6830669 0.000000
+chr1 6840669 0.000000
+chr1 6850669 0.000000
+chr1 6860669 0.000000
+chr1 6870669 0.000000
+chr1 6880669 0.000000
+chr1 6890669 0.000181
+chr1 6900669 1.872161
+chr1 6910669 0.147155
+chr1 6920669 1.271715
+chr1 6930669 1.271715
+chr1 6940669 1.266467
+chr1 6950669 1.447295
+chr1 6960669 0.594136
+chr1 6970669 0.435450
+chr1 6980669 0.175606
+chr2 5024443 1.552271
+chr2 5034443 1.552271
+chr2 5044443 1.552271
+chr2 5054443 1.552271
+chr2 5064443 1.552271
+chr2 5074443 1.552271
+chr2 5084443 0.793999
+chr2 5094443 0.000025
+chr2 5104443 0.000017
+chr2 5114443 0.000017
+chr2 5124443 0.000002
+chr2 5134443 0.000000
+chr2 5144443 0.243856
+chr2 5154443 1.918936
+chr2 5164443 0.000000
+chr2 5174443 1.885490
+chr2 5184443 5.371328
+chr2 5194443 6.192948
+chr2 5204443 1.239209
+chr2 5214443 0.472705
+chr2 5224443 1.336251
+chr2 5234443 1.574374
+chr2 5244443 1.574374
+chr2 5254443 1.574374
+chr2 5264443 7.299673
+chr2 5274443 0.000000
+chr2 5284443 0.406670
+chr2 5294443 1.006111
+chr2 5304443 1.297654
+chr2 5314443 2.326105
+chr2 5324443 0.000000
+chr2 5334443 0.000000
+chr2 5344443 0.000000
+chr2 5354443 0.000000
+chr2 5364443 0.268418
+chr2 5374443 1.079875
+chr2 5384443 1.514287
+chr2 5394443 0.000000
+chr2 5404443 6.137154
+chr2 5414443 6.547622
+chr2 5424443 2.827263
+chr2 5434443 0.435357
+chr2 5444443 11.92755
+chr2 5454443 3.866569
+chr2 5464443 1.685853
+chr2 5474443 4.597484
+chr2 5484443 7.489628
+chr2 5494443 1.458231
+chr2 5504443 3.421633
+chr2 5514443 6.584612
+chr2 5524443 2.258016
+chr2 5534443 1.284206
+chr2 5544443 2.745920
+chr2 5554443 0.810027
+chr2 5564443 2.133874
+chr2 5574443 0.000000
+chr2 5584443 0.000000
+chr2 5594443 1.063204
+chr2 5604443 0.000000
+chr2 5614443 3.913138
+chr2 5624443 16.33110
+chr2 5634443 2.170685
+chr2 5644443 1.164291
+chr2 5654443 0.060685
+chr2 5664443 0.000000
+chr2 5674443 0.758489
+chr2 5684443 0.856566
+chr2 5694443 0.856566
+chr2 5704443 0.856566
+chr2 5714443 0.856566
+chr2 5724443 1.757837
+chr2 5734443 8.394131
+chr2 5744443 0.428384
+chr2 5754443 1.856722
+chr2 5764443 0.000000
+chr2 5774443 0.000000
+chr2 5784443 2.413897
+chr2 5794443 0.307011
+chr2 5804443 0.631861
+chr2 5814443 2.669932
+chr2 5824443 0.000000
+chr2 5834443 0.179944
+chr2 5844443 0.648664
+chr2 5854443 0.000000
+chr2 5864443 0.745850
+chr2 5874443 1.189364
+chr2 5884443 0.501317
+chr2 5894443 0.570182
+chr2 5904443 7.277858
+chr2 5914443 0.000477
+chr2 5924443 7.710440
+chr2 5934443 0.000031
+chr2 5944443 0.000000
+chr2 5954443 0.000000
+chr2 5964443 0.742661
+chr2 5974443 1.179453
+chr2 5984443 0.002240
+chr2 5994443 4.307672
+chr2 6004443 0.000000
+chr3 5046894 10.64411
+chr3 5056894 9.986328
+chr3 5066894 3.602384
+chr3 5076894 2.460953
+chr3 5086894 26.27610
+chr3 5096894 2.504649
+chr3 5106894 1.804089
+chr3 5116894 2.835807
+chr3 5126894 0.733710
+chr3 5136894 0.733710
+chr3 5146894 0.672918
+chr3 5156894 0.108278
+chr3 5166894 0.108278
+chr3 5176894 0.289002
+chr3 5186894 0.301463
+chr3 5196894 0.301463
+chr3 5206894 0.156158
+chr3 5216894 0.037662
+chr3 5226894 0.215457
+chr3 5236894 2.083384
+chr3 5246894 10.65443
+chr3 5256894 4.429434
+chr3 5266894 4.522011
+chr3 5276894 6.500327
+chr3 5286894 2.226008
+chr3 5296894 0.325378
+chr3 5306894 0.776495
+chr3 5316894 0.027397
+chr3 5326894 1.915761
+chr3 5336894 0.084375
+chr3 5346894 7.163210
+chr3 5356894 2.707681
+chr3 5366894 0.446767
+chr3 5376894 0.000000
+chr3 5386894 8.246309
+chr3 5396894 4.143360
+chr3 5406894 0.000000
+chr3 5416894 0.000000
+chr3 5426894 2.452359
+chr3 5436894 1.245422
+chr3 5446894 1.255122
+chr3 5456894 1.786497
+chr3 5466894 3.234763
+chr3 5476894 24.07315
+chr3 5486894 0.000022
+chr3 5496894 0.000000
+chr3 5506894 0.000000
+chr3 5516894 1.972394
+chr3 5526894 1.032322
+chr3 5536894 4.096099
+chr3 5546894 7.020589
+chr3 5556894 3.275924
+chr3 5566894 2.900866
+chr3 5576894 1.017106
+chr3 5586894 3.405825
+chr3 5596894 3.722481
+chr3 5606894 0.000000
+chr3 5616894 0.000000
+chr3 5626894 0.000000
+chr3 5636894 0.000000
+chr3 5646894 0.000000
+chr3 5656894 0.000000
+chr3 5666894 1.837783
+chr3 5676894 1.810645
+chr3 5686894 0.140680
+chr3 5696894 0.000023
+chr3 5706894 2.552364
+chr3 5716894 2.024765
+chr3 5726894 0.177264
+chr3 5736894 0.819907
+chr3 5746894 0.512524
+chr3 5756894 0.000000
+chr3 5766894 0.417875
+chr3 5776894 43.05484
+chr3 5786894 1.881974
+chr3 5796894 2.214665
+chr3 5806894 2.131870
+chr3 5816894 0.000000
+chr3 5826894 0.710425
+chr3 5836894 0.000000
+chr3 5846894 0.000000
+chr3 5856894 0.000000
+chr3 5866894 3.189427
+chr3 5876894 1.015402
+chr3 5886894 0.192219
+chr3 5896894 0.036432
+chr3 5906894 2.620555
+chr3 5916894 2.050218
+chr3 5926894 0.000019
+chr3 5936894 0.000051
+chr3 5946894 0.000003
+chr3 5956894 0.000000
+chr3 5966894 0.000000
+chr3 5976894 0.682530
+chr3 5986894 1.110437
+chr3 5996894 0.640657
+chr3 6006894 0.000000
+chr3 6016894 0.000000
+chr3 6026894 0.000000