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Pinned

  1. NapShift NapShift Public

    This repository provides a Python implementation of the NapShift program to predict the backbone atoms' chemical shift values, from NMR protein PBD structures, using artificial neural networks.

    Python 2

  2. MeanFieldVarGP MeanFieldVarGP Public

    Mean field variational Gaussian process algorithm. This repository contains a python3 implementation of the variational mean field algorithm as described in the paper: Physical Review E. vol. 91, 2…

    Python 1

  3. VGPA VGPA Public

    Variational Gaussian Process Approximation. This project contains a python3 implementation of the original VGPA algorithm for approximate inference in SDEs.

    Python 5 1

  4. HydroModel HydroModel Public

    Hydrological Model (Berkeley). This project implements the underground (stochastic) hydrological model (in Python) that was developed during my postdoctoral tenure at the Dept. of Earth & Planetary…

    Python 2

  5. SOMap SOMap Public

    Self organizing maps (SOM) in Python3.

    Python

  6. MetalHawk MetalHawk Public

    A machine learning-based approach for metal site geometry

    Python 3 1