Merge pull request #25 from vpc-ccg/speedup

Speedup
vpc-ccg · Feb 9, 2021 · e9e0dd9 · e9e0dd9
2 parents 448cac5 + ff44eb4
commit e9e0dd9
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Showing 4 changed files with 248 additions and 147 deletions.
diff --git a/Snakefile b/Snakefile
@@ -51,8 +51,10 @@ rule split:
         split = directory('{}/{{sample}}/freddie.split'.format(output_d)),
     conda:
         'environment.env'
+    threads:
+        8
     shell:
-        '{input.script} -b {input.bam} -r {input.reads} -o {output.split}'
+        '{input.script} -b {input.bam} -r {input.reads} -o {output.split} -t {threads}'
 
 rule segment:
     input: