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MacCoss Lab

MacCoss Lab in Genome Sciences at Univesity of Washington

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  1. AstralBenchmarking AstralBenchmarking Public

    Analysis code to benchmark the Astral mass analyzer

    R 3 1

  2. iontrap_vs_orbitrap iontrap_vs_orbitrap Public

    Analysis code used in the manuscript "Comparison of unit resolution versus high-resolution accurate mass for parallel reaction monitoring"

    Python 1 1

  3. dynamic-DIA dynamic-DIA Public

    Code for dynamic DIA method

    Jupyter Notebook 1 1

  4. manuscript-mag-net manuscript-mag-net Public

    This repository is associated with a biorxiv preprint for the Mag-Net EV enrichment method.

    Jupyter Notebook 1

  5. manuscript-qc-system-suitability manuscript-qc-system-suitability Public

    This repository is associated with a bioRxiv preprint describing the MacCoss laboratory's quality control measures for sample preparation, system suitability, and assessing results.

    R 1

  6. nf-dia-batch-correction nf-dia-batch-correction Public

    Perform normalization and batch correction on one or more Skyline documents

    Nextflow 1 1

Repositories

Showing 10 of 16 repositories
  • manuscript-mag-net Public

    This repository is associated with a biorxiv preprint for the Mag-Net EV enrichment method.

    uw-maccosslab/manuscript-mag-net’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 0 0 0 Updated Dec 14, 2024
  • nf-dia-batch-correction Public

    Perform normalization and batch correction on one or more Skyline documents

    uw-maccosslab/nf-dia-batch-correction’s past year of commit activity
    Nextflow 1 Apache-2.0 1 0 0 Updated Nov 8, 2024
  • manuscript-qc-system-suitability Public

    This repository is associated with a bioRxiv preprint describing the MacCoss laboratory's quality control measures for sample preparation, system suitability, and assessing results.

    uw-maccosslab/manuscript-qc-system-suitability’s past year of commit activity
    R 1 Apache-2.0 0 0 0 Updated Sep 4, 2024
  • manuscript-stellar-biofluid Public
    uw-maccosslab/manuscript-stellar-biofluid’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Jun 4, 2024
  • nf-pdc-dia Public
    uw-maccosslab/nf-pdc-dia’s past year of commit activity
    Nextflow 0 1 0 0 Updated May 2, 2024
  • panoramaclient Public
    uw-maccosslab/panoramaclient’s past year of commit activity
    Java 0 0 0 0 Updated Dec 15, 2023
  • AstralBenchmarking Public

    Analysis code to benchmark the Astral mass analyzer

    uw-maccosslab/AstralBenchmarking’s past year of commit activity
    R 3 Apache-2.0 1 0 0 Updated May 31, 2023
  • wdl_pipelines Public
    uw-maccosslab/wdl_pipelines’s past year of commit activity
    WDL 0 0 0 0 Updated May 31, 2023
  • ADBrainCleanDiagDIA Public

    A Peptide-Centric Quantitative Proteomics Dataset for the Phenotypic Assessment of Alzheimer’s Disease

    uw-maccosslab/ADBrainCleanDiagDIA’s past year of commit activity
    R 0 MIT 0 0 0 Updated Feb 10, 2023
  • single_molecule_counting Public
    uw-maccosslab/single_molecule_counting’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 18, 2023
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