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Release 1.2.0
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@zhuchcn zhuchcn released this 02 Aug 16:21
· 307 commits to main since this release
v1.2.0
6ccf813
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Learn about vigilant mode.

Fixed

  • Fixed that reference source are not recognized. Switched to use upper case values. #758

  • Fixed generateIndex that symlink was not created properly for GTF with --gtf-symlink.

  • Fixed matplotlib warning message #742

  • Fixed parseVEP that insertions not parsed successfully if the location is a single base. #766

  • Fixed callVariant that peptides with upstream cleavage altering mutations were not called. #670

  • Fixed fuzzTest to take multiple CPUs and use temporary directory.

  • Fixed issue in callVariant of circRNA with a SNV being silent in the first loop but not in the second.

  • Fixed issue that circRNA peptide nodes with and without a silent mutation were collapsed. #778

  • Fixed that circRNA peptides that carry indels incompatible with the orf start node should not be called. #780

  • Fixed that hybrid node was not identified if the variant is in the end of an exon. #782

  • Fixed that in circRNA, cleavage gain from upstream node is added to the the wrong ORF. #783

  • Fixed callVariant that fit_into_codon terminated early in fusion transcripts when there donor has a frameshift and accepter has a variant right after the breakpoint. #786

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