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Changed
Fixed the problem that in summarizeFasta output the order of variant sources in the same group is not consistent across runs. #428
Argument --ignore-missing-source added to summarizeFasta so sources not present in any GVF can be ignored without raising any error. #436
In filterFasta, when filter with expression table, changed to filter out peptides smaller than, instead of smaller or equal to, the value of --quant-cutoff.
Fixed the issue that in splitFasta, variant sources are not grouped as they are specified by --group-source#439
Added
Resources usage including memory, CPU and time is now printed to stdout in the end of all command line programs.
Fixed
Fixed issue that --additional-split not recognized properly in splitFasta. #443