Making Protein folding accessible to all!

Deep neural models for core NLP tasks (Pytorch version)

An implementation of the DeepMind's AlphaFold based on PyTorch for research

Evolutionary couplings from protein and RNA sequence alignments

Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

Protein Secondary Structure predictor using Convolutional Neural Networks

[EMNLP 2022] Generative Knowledge Graph Construction: A Review

nucleic acid folding

This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the University of Milano, originally inspired by https://github.com/pb3lab/ibm3202

Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.

PSP is a python toolkit for predicting atomic-level structural models for a range of polymer geometries.

Prospr is a universal toolbox for protein structure prediction within the HP-model. The Python package is based on a C++ core, which gives Prospr its high performance. The C++ core is made available as a separate zip file to facilitate high-performance computing applications. The package comes with many prediction algorithms and datasets to use.

Python bindings for the `buildcell` program for Ab Initio Random Structure Searching (AIRSS)

[ACL 2023] SPEECH: Structured Prediction with Energy-Based Event-Centric Hyperspheres

Your open-source alternative to AlphaFold3🚀

Active Imitation Learing with Noisy Guidance

A set of libraries for aligning, profiling, and predicting the structure of proteins

A deep learning method that identifies improved protein conformational states in trajectory data from refinement simulations

deep learning based prediction of structures and functional groups from MS/MS spectra

Recurrent neural network implementations for protein secondary structure prediction and language models