MAGICS-LAB / DNABERT_2 Star 184 Code Issues Pull requests [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome transcription-factors genome splice dna dataset promoters promoter transcription-factor-binding language-model genome-analysis promoter-analysis transcription-factor-binding-site covid dna-processing splice-site dna-training Updated May 28, 2024 Shell
OluwadareLab / DeepSplicer Star 2 Code Issues Pull requests DeepSplicer machine-learning deep-learning dna-sequences deep-convolutional-neural-networks splice-site oluwadare-lab Updated Dec 17, 2022 Python
OluwadareLab / EnsembleSplice Star 2 Code Issues Pull requests Ensemble Deep Learning for Splice Site Prediction machine-learning deep-neural-networks deep-learning convolutional-neural-networks rna-seq-analysis splice-site oluwadare-lab Updated Jan 22, 2024 PureBasic
nalaekaw / exon_intron Star 1 Code Issues Pull requests Deep neural network for splice sites prediction cnn exon splice-junctions intron splice-site Updated Jun 6, 2022 Jupyter Notebook
OluwadareLab / CNNSplice Star 0 Code Issues Pull requests CNNSplice: Robust Models for Splice Site Prediction Using Deep Convolutional Neural Networks machine-learning deep-learning convolutional-neural-networks rna-seq-analysis splice-site Updated May 25, 2023 Python
Xu-Lab-WHU / UnusedIndex Star 0 Code Issues Pull requests Bioinformatic tool to measure the Unused Index of each Splice Site from RNA-seq rna-seq splice-site Updated Nov 12, 2020 C++